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iccbl

1.7.2

Progress:
16 of 16 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#904] study creator	2	Closed
		[#907] screen viewer: attach publication document	3	Closed
		[#1173] add comments field to screen result	3	Closed
		[#1271] screen result 'shareable' editing	3	Closed
		[#1290] screeners browser should include only users w/'screener' role	2	Closed
		[#1373] add 'requested havard id expiration date' property to user and user viewer	2	Closed
		[#1426] add concentration field to library screening activity	3	Closed
		[#1433] reserve reagent from minimal number of copies	1	Closed
		[#1444] libraries restricted from screening	3	Closed
		[#1461] new users should not automatically be granted login privileges	3	Closed
		[#1491] add new funding support values	2	Closed
		[#1493] user viewer error when editing checklist items for new user	2	Closed
		[#1495] reviewable cherry pick warnings	3	Closed
		[#1512] domain model support for concentration units	3	Closed
		[#1525] error when adding billing item	2	Closed
		[#1570] error on adding cherry picks to cpr	1	Closed

 

1.7.5

Progress:
3 of 3 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1890] userActivity log session ID is no longer useful	3	Closed
		[#1934] screen funding supports managed in database	3	Closed
		[#1935] add screen "pin transfer approval" administrative activity	3	Closed

 

1.7.6

Progress:
0 of 12 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1190] well volume adjustment simplifications	3	Open
		[#1205] well volumes initial volume wrong	3	Open
		[#1207] empty wells should be reported as having 0 volume for well copies	3	Open
		[#1216] reinstate WellCopyVolumeSR row detail	3	Open
		[#1223] WellVolumeSearchResults out of memory	3	Open
		[#1258] find well volumes by reagent id	3	Open
		[#1319] well volume search results: split remaining volume column	3	Open
		[#1331] well copy volume search results: filter out well copies not plated	3	Open
		[#1347] CPRV 'View Well Volume' is slow	3	Open
		[#1611] readEverythingAdmin not able to view well volumes	4	Open
		[#1993] refactor and improve VocabularyTerm	3	Open
		[#1996] add CSV export option	3	Open

 

1.7.x

Progress:
0 of 19 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1182] add transactional annotations and refactor service layer from backing bean methods	4	Open
		[#1194] JSF checkbox in 'displayOnly' mode responds to user events	4	Open
		[#1212] data table navigation panel duplicated below table	4	Open
		[#1226] auto-close 'Search' and 'Columns' panels in search results	4	Open
		[#1236] case-insensitive searching	2	Open
		[#1238] filter criteria operators broken	3	Open
		[#1259] user interface field validation	2	Open
		[#1281] back button in search results	4	Open
		[#1287] search results: 'rows displayed' count out-of-sync	4	Open
		[#1316] date fields	5	Open
		[#1321] wrap long SMILES in Well Search Results Viewer	5	Open
		[#1341] multi-property table column type	4	Open
		[#1359] fixed_decimal search field should ignore scale	2	Open
		[#1360] date equality search on DateTime type	2	Open
		[#1367] entity viewers always within search results context	4	Open
		[#1430] user-specified exported data file name	4	Open
		[#1602] refactor NameValueTable	4	Open
		[#1614] well deprecation reason highlighted	4	Open
		[#1657] data table columns are duplicated on initial display	4	Open

 

1.8.0

Progress:
65 of 65 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#840] make the availability of the cellHTS2 feature configurable	3	Closed
		[#1172] orphan problems on unload library contents	3	Closed
		[#1177] library import performance	2	Closed
		[#1192] structure image display is broken for some compounds	2	Closed
		[#1195] show duplexes in {reagent,well} {viewer,browser}	2	Closed
		[#1204] SilencngReagent needs explicit pool-to-duplex mapping	2	Closed
		[#1209] library contents viewing permissions	2	Closed
		[#1210] various library contents loaders should do better at sharing code	2	Closed
		[#1225] RelationshipPath improvements	4	Closed
		[#1230] test library data should include empty wells	4	Closed
		[#1234] Compound Library Importer does not report any errors when run with Open Babel not installed	3	Closed
		[#1240] mocks for third-party stuff in sd file compound library contents parser unit tests	3	Closed
		[#1254] all LibraryContentsParser classes must respect startPlate/endPlate	3	Closed
		[#1256] display 'reagent source id' constituent parts	3	Closed
		[#1270] rename 'compound' to 'small molecule'	4	Closed
		[#1291] remove model.derivatives package	4	Closed
		[#1292] store pre-calculated library size	3	Closed
		[#1306] modify compound library contents importer to use hibernate cache	4	Closed
		[#1307] model unit test overhaul	2	Closed
		[#1326] Well, Reagent, Vendor, AnnotationValue entities & relns	4	Closed
		[#1333] pool-to-duplex mapping fails for pool well has "unknown sequences" flag	4	Closed
		[#1338] store molecular mass and molecular formula in the database, instead of recomputing them each page view	2	Closed
		[#1343] library importer tests	2	Closed
		[#1351] sd file library contents importer should take chembank ids	2	Closed
		[#1358] molecular mass incorrect	1	Closed
		[#1362] remove network I/O from library contents loaders	1	Closed
		[#1420] SD file 'compound name' tag variants	4	Closed
		[#1459] document openbabel dependency	5	Closed
		[#1469] duplicate columns in gene table	4	Closed
		[#1494] review library entity requirements	2	Closed
		[#1554] molecular weight and formula ignoring implicit H atoms	1	Closed
		[#1581] library loading memory usage	4	Closed
		[#1586] wells should maintain both orig and latest entrez gene info	2	Closed
		[#1610] remove LibraryUploadThread	2	Closed
		[#1765] library contents versioning	2	Closed
		[#1766] one-to-one well-compound relationship	2	Closed
		[#1767] remove openbabel dependency from library contents loaders	3	Closed
		[#1768] make Reagent base type of SmallMoleculeReagent (aka Compound) and SilencingReagent	3	Closed
		[#1769] add NaturalProductsReagent entity	3	Closed
		[#1770] add NaturalProductReagent to user interface	3	Closed
		[#1772] rename WellType to LibraryWellType	3	Closed
		[#1896] merge back Workbook2 updates from oshernatprod project	3	Closed
		[#1903] remove CAS and NSC numbers from domain model	3	Closed
		[#1907] library contents version "release"	3	Closed
		[#1908] delete library contents version	3	Closed
		[#1914] Remove unneeded fields for Small Molecule Libraries import	3	Closed
		[#1917] New Format for the RNAiLibraryParser input xls file	2	Closed
		[#1927] Determine Pool to Duplex error conditions and CLI options for RNAi Library Contents Load	2	Closed
		[#1950] error when specifying funding support on new screen	2	Closed
		[#1954] add Library.isPool field	3	Closed
		[#1961] add "miRNA" silencing reagent type	3	Closed
		[#1962] change library import file spec list delimiter to semicolon	3	Closed
		[#1963] add "molecular weight" to small molecule reagent	3	Closed
		[#1967] restrict access to structure image URLs	2	Closed
		[#1977] max file upload size limitation	3	Closed
		[#1989] add "Silencing Reagent Type" column to Well Search Results	3	Closed
		[#1990] well search results workbook export should use multiple worksheets when needed	3	Closed
		[#1995] add "Reagent ID", "Sequence" to "Duplex Wells" table in Well Viewer	3	Closed
		[#2009] activity viewer "Add plates screened" command causes error	3	Closed
		[#2010] build fails if image/structure-images does not exist	3	Closed
		[#2011] CPR viewer "download" command is broken for CP w/o reagent	3	Closed
		[#2012] CPR Viewer "Record Failed Assay Plates" command broken	3	Closed
		[#2015] "Browse Screens" broken for marcusAdmin users	3	Closed
		[#2036] SD file record header is too strict	2	Closed
[#2037] smiles and inchi should not be required by small molecule library contents parser	3	Closed

 

1.8.1

Progress:
10 of 10 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1674] link in users browser broken for user name containing apostrophe	3	Closed
		[#1709] screen viewer attached file upload duplicate error message	4	Closed
		[#2024] Add PMCID field to publications	2	Closed
		[#2032] add "Roles" column to UserSearchResults	4	Closed
		[#2043] do not allow a new screener to be entered w/o a lab head	2	Closed
		[#2057] Add an "About Screensaver" link	4	Closed
		[#2070] new Attached File Type values	3	Closed
		[#2078] Attached File Type values configurable in database	3	Closed
		[#2098] add screen summary columns to lab activities browser	3	Closed
		[#2099] error when adding second attached file of duplicate type	2	Closed

 

1.9.0

Progress:
0 of 3 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1269] add 'cherry picked' column to well search results, well viewer	3	Open
		[#1304] cross-screen comparison of positives	3	Open
		[#1476] validation screen results	2	Open

 

1.9.1

Progress:
0 of 8 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#892] find screens by plate numbers	3	Open
		[#1228] show plates screened	2	Open
		[#1268] show libraries screened	3	Open
		[#1288] create library copy	2	Open
		[#1516] screen result plate status	2	Open
		[#1520] library copy volume tracking & reservations	3	Open
		[#1522] assay plate entity	2	Open
		[#1606] plates in rnai cpr screening activity	3	Open

 

1.9.2

Progress:
0 of 11 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1185] CPRV: visual plate layout	4	Open
		[#1193] override cherry pick source well	3	Open
		[#1246] canceled LCPs should decrement CPR.numberOfUnfulfilledLCPs	2	Open
		[#1247] CPR Viewer: map unfulfilled LCPs	2	Open
		[#1251] remove CPR visit ID	4	Open
		[#1260] 'add cpr request' should persist cpr entity after first save	4	Open
		[#1335] eliminate "Create new CPR for unfulfilled LCPs" feature	3	Open
		[#1354] SM CPRV LazyInitEx when CPR.screen.screenResult != null	4	Open
		[#1500] unit tests for CPR policy warnings	4	Open
		[#1549] add '# of lab cherry picks' column to CPR browser	4	Open
		[#2014] add CPRViewer admin warning for duplicate LCP source wells	3	Open

 

1.9.3

Progress:
0 of 11 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1174] show % cherry picks on screen viewer	4	Open
		[#1198] coalesce {Study,Screen}Viewer UI	2	Open
		[#1252] screens browser: add billing info columns	3	Open
		[#1261] attached file: add uploadedBy, author, description properties	3	Open
		[#1283] save Attached File Type default selection	4	Open
		[#1295] screen checklist items	4	Open
		[#1324] study/screen/iccbscreen	2	Open
		[#1342] linking screens	3	Open
		[#1366] screen viewer loading screen.collaborators.screensCollaborated	5	Open
		[#1454] screen-based authorization for restricted libraries	3	Open
		[#1557] tracking screen supplies	4	Open

 

1.9.x

Progress:
1 of 8 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1191] screen result support for multiple analysis methods (data header groups)	3	Open
		[#1197] annotation support in screen results	3	Open
		[#1221] data header info for all screen results	3	Open
		[#1311] DuplicateEntityException to be thrown consistently in data model	3	Open
		[#1336] help system out-of-date	2	Open
		[#1422] default well search result study columns	4	Open
		[#1553] add 'comments' field to screen result parser	3	Open
		[#2119] Optimize ScreenResultParser for scalability with large import sets	2	Closed

 

2.0.x

Progress:
0 of 7 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1264] full text search on screen text fields	2	Open
		[#1300] data auditing	2	Open
		[#1310] replace HSSF with jxl	4	Open
		[#1315] import plate reader data into Screensaver as raw screen results	4	Open
		[#1332] real-time fetching of pubchem info via CID	4	Open
		[#1434] integrate PubChem dendrograms	4	Open
		[#1496] admin policy overrides recorded as admin activity	4	Open

 

data-sharing-levels

Progress:
3 of 13 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1250] write jsfunit tests for data policy verification at ui level	2	Open
		[#1296] support for new user data sharing agreement	2	Open
		[#1344] normalize ResultValue.assayWellType	3	Open
		[#2040] auto-add screener facility usage roles when user associated with a screen	3	Open
		[#2041] Add "update user agreement" command for one-step updates of all UA-related user properties	3	Closed
		[#2042] add explicit admin role for user-role updates	3	Closed
		[#2056] inform user of login failure reason	2	Open
		[#2067] create AssayWell entity	2	Open
		[#2076] marcus admins should only be able to edit marcus checklist items	3	Open
		[#2125] re-profile screen result parser memory optimizations	3	Open
		[#2129] partition user roles into "data access" and "facility usage"	3	Closed
		[#2130] assay wells 'shareable' flag	4	Open
		[#2133] viewing of mutual positives data from others' screen viewer page	4	Open

 

library-mgmt-2

Progress:
1 of 27 item(s) have been closed

Tracker Name	Field Name	Summary	Priority	Status Id
Screensaver Tasks	Planned Release	[#1170] compound structure column in well search results and exported workbook	2	Open
		[#1255] natural product libraries data import & access improvements	3	Open
		[#1289] 'pubchem CID missing' message	4	Open
		[#1371] library freeze/thaw reporting	2	Open
		[#1378] cross-screen comparisons should be on reagent, not well	3	Open
		[#1587] library delete command performance	4	Open
		[#1612] job execution framework	2	Open
		[#1800] downloadable sdfile creation	2	Open
		[#1909] study annotations should annotate well, not reagent	3	Open
		[#1946] add Library Vendor entity	3	Open
		[#1947] add small molecule mass, weight, and formula fileds to well search results	3	Open
		[#1955] simultaneous import of related pool and duplex libraries	4	Open
		[#1968] well search results shows multiple library contents versions for same well	3	Open
		[#1969] unit tests for small molecule library import errors	3	Open
		[#1970] unit tests for natural product library import errors	3	Open
		[#1971] natural products library import file spec should include "well type"	3	Open
		[#1972] move "facility ID" to reagent	4	Closed
		[#1973] rename "compound name" to "vendor chemical name"	3	Open
		[#1974] replace WellViewer.getSpecialMessage() with Library.wellComments	4	Open
		[#1975] add "Browse" command to well viewer "other wells" and "duplexes" well tables	3	Open
		[#1976] large file download out-of-memory error	3	Open
		[#1991] save import errors	3	Open
		[#1992] import library contents delta	3	Open
		[#2021] consider renaming "library contents version" to "revision"	3	Open
		[#2038] implement HTML formatting of molecular formulas	3	Open
		[#2059] rename "screensaverUser" role	4	Open
		[#2075] report duplicate reagent well error on library contents import	3	Open

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