Harvard ABCD Forge > Projects > Screensaver HTS LIMS > Tracker > Screensaver Tasks

[#1204] SilencngReagent needs explicit pool-to-duplex mapping

Submitted By: Andrew Tolopko
Start Date* Oct 22 2007	End Date* Nov 22 2007
Priority: Medium High	Assignee: Andrew Tolopko Sean Erickson
Status: Closed	Component: N/A
Branch: iccbl	Impact: refactoring
Stakeholders:	RTID: 102278
Revision Found:	Resolution: Fixed/Implemented
Active: Inactive	Estimated Effort: Medium (<= week)
Planned Release : 1.8.0	Goals Addressed: Data Quality
Components: Well/Reagent Domain Model	Priority Approved: Jan 12 2009
Audience:
Summary SilencngReagent needs explicit pool-to-duplex mapping
Details It would be nice to update the data model to have explicit modeling of the mapping between pool and duplex wells. In particular, LibraryPoolToDuplexWellMapper will benefit.
Details It would be nice to update the data model to have explicit modeling of the mapping between pool and duplex wells. In particular, LibraryPoolToDuplexWellMapper will benefit.

Follow-ups
Submitted By: Andrew Tolopko Adddate: 2008-10-02 12:44:22 We won't be able to use the library naming convention mechanism for performing the pool-to-duplex mapping once we introduce the new "corrected" duplex library. We'll need to address this bug at that time.
Submitted By: Andrew Tolopko Adddate: 2009-07-20 12:42:21 Implemented in the domain model, and in CherryPickRequestCherryPicksAdder, but still need to unit and system test.
Submitted By: Andrew Tolopko Adddate: 2009-07-28 16:18:10 Passed manual UI testing: - Well Viewer shows duplexes for pools - CPRViewer successfully maps pools to duplexes.

File Name	File Type	File Size	Posted By
No Files Were Found

Change Date	User Id	Field Name	Old Value	New Value
2009-07-28 16:18:10	Andrew Tolopko	active39	None	Inactive
2009-07-28 16:18:10	Andrew Tolopko	resolution	None	Fixed/Implemented
2009-07-28 16:18:10	Andrew Tolopko	status	Open	Closed
2009-07-20 11:17:08	Andrew Tolopko	plannedrelease	None	library_mgmt
2009-07-20 11:17:08	Andrew Tolopko	estimatedeffort	None	Medium (<= week)
2009-07-20 11:17:08	Andrew Tolopko	assignee	Nobody	Removed
2009-07-20 11:17:08	Andrew Tolopko	assignee	None	Andrew Tolopko
2009-07-20 11:17:08	Andrew Tolopko	assignee	None	Sean Erickson
2009-07-20 11:17:08	Andrew Tolopko	summary	model enhancements with Reagent entity	SilencngReagent needs explicit pool-to-duplex mapping
2008-12-12 06:54:42	Andrew Tolopko	release	1.8.x	1.9.x
2008-12-12 06:54:42	Andrew Tolopko	assignee	None	Nobody
2008-10-02 12:44:17	Andrew Tolopko	_created_		model enhancements with Reagent entity

File	Date	Previous Version	New Version	Message Log	By
/branches/iccbl/library-mgmt-rework/resources/hibernate.cfg.xml	2009-03-20 13:06:26	Diff To 3021	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/iccbl/screensaver/io/libraries/compound/DaylightOrchestraStructureImageProvider.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/iccbl/screensaver/io/libraries/compound/SmallMoleculeLibraryStructureImageGenerator.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/iccbl/screensaver/io/libraries/compound/StaticHashedSmilesStructureImageProvider.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/iccbl/screensaver/policy/WebDataAccessPolicy.java	2009-03-20 13:06:26	Diff To 3021	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/db/accesspolicy/UnrestrictedDataAccessPolicy.java	2009-03-20 13:06:26	Diff To 3021	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/db/LibrariesDAO.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/BulkCompoundLibraryLoader.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/PubChemStructureImageProvider.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/SDFileCompoundLibraryContentsParser.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/SDRecordData.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/SDRecordParser.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/StructureImageProvider.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/upgraders/BioactivesSubmissionCompoundNameGrabber.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/upgraders/ChembankIdUpgrader.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/compound/upgraders/CompoundPubchemCidListUpgrader.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/libraries/WellSdfWriter.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/io/screenresults/ExtantLibraryException.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/AbstractEntity.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/AbstractEntityVisitor.java	2009-03-20 13:06:26	Diff To 3021	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/cherrypicks/LabCherryPick.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/Compound.java	2009-03-20 13:06:26	Diff To 3024	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/Gene.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/LibraryContentsVersion.java	2009-03-20 13:06:26		3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/Library.java	2009-03-20 13:06:26	Diff To 3020	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/Reagent.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/SilencingReagent.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/SmallMoleculeReagent.java	2009-03-20 13:06:26	Diff To 3023	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/Well.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/libraries/WellType.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/model/MakeDummyEntities.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/ui/libraries/CompoundViewer.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/ui/libraries/ReagentViewer.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/ui/namevaluetable/CompoundNameValueTable.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/ui/namevaluetable/ReagentNameValueTable.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/ui/searchresults/ReagentSearchResults.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/src/edu/harvard/med/screensaver/ui/searchresults/WellSearchResults.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/db/GenericEntityDAOTest.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/db/LibrariesDAOTest.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/io/libraries/compound/SDFileCompoundLibraryContentsParserTest.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/io/screens/StudyAnnotationParserTest.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/model/AbstractEntityInstanceTest.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/model/cherrypicks/CompoundCherryPickRequestTest.java	2009-03-20 13:06:26	Diff To 3022	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/model/libraries/CompoundTest.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/test/edu/harvard/med/screensaver/ui/searchresults/ReagentsSearchResultTest.java	2009-03-20 13:06:26	Diff To 3019	3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko
/branches/iccbl/library-mgmt-rework/uml.zargo	2009-03-20 13:06:26		3025	Initial, sweeping changes to model in library package. Completely and utterly broken, and highly experimental. This is an intermediate commit for safety reasons only. - [#1270] (rename 'compound' to 'small molecule') - [#1765] (library contents versi...	Andrew Tolopko

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1195	show duplexes in {reagent,well} {viewer,browser}

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